More Hints of Order in the Genome

Abo1, Amir Bitran, ATP, biochemistry, Biozentrum, Caulobacter crescentus, central dogma, Chelsea R. Bulock, chromosomes, cohesin, cotranslational folding, Darwinian mechanism, DNA, E. coli, error catastrophe, genome, GGC, GGU, Intelligent Design, Junk DNA, Lego blocks, misfolding, mRNA, Nature Communications, Patricia Clark, PNAS, polymerase, polypeptides, Polδ, proofreader, proteins, RNA, South Korea, strand breaks, UNIST, University of Basel, University of Notre Dame, University of Seville, William Paley
Genomics has come a long way since the central dogma (the notion that DNA is the master controller that calls all the shots) and junk DNA (the expectation that much of the genome is non-functional). If scientists ditch those old dogmas and approach the genome expecting to find reasons for things, they often do. Synonymous Mutations To-may-to or to-mah-to? The British write flavour; the Americans write flavor, but generally each understands the other without too much difficulty. Genomes, too, have alternate ways of spelling things: GGU and GGC in messenger RNA both spell glycine. No big deal, thought geneticists; these “silent” mutations cause no change in the resulting protein. At the University of Notre Dame, however, biochemists are finding that the differences in spelling are not just background noise; they…
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BioEssays Editor: “‘Junk’ DNA… Full of Information!” Including Genome-Sized “Genomic Code”

adenine, Advanced Science News, Andrew Moore, BioEssays, Biological Information: New Perspectives, cytosine, DNA, ENCODE, Evolution, Francis Crick, function, genome, genomic code, Giorgio Bernardi, guanine, Intelligent Design, isochores, Junk DNA, Leslie Orgel, narrative gloss, overlapping codes, proteins, selective pressure, thymine, viral genomes
How many times have we heard it claimed that the vast majority of the human genome is “junk” and therefore could not have been designed? Even in the face of overwhelming evidence from the ENCODE project and numerous other studies showing that most of our genome has biochemical function, most evolutionists still maintain that our genomes are largely junk. But a few brave scientists, including some rare evolutionists, have been willing to buck that trend.  In a new article at Advanced Science News — “That ‘Junk’ DNA… Is Full of Information!” — Andrew Moore, the Editor-in-Chief of the respected biology journal BioEssays, comments on a new BioEssays paper. The paper finds that our DNA contains overlapping layered “’dual-function’ pieces of information,” including a “genomic code” that spans virtually the entire…
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“Genomic Perfection” Versus “Cellular Survival”

cell, cellular survival, cleaning robots, DNA, DNA integrity, DNA lesion, DNA repair, environmental mutagens, genome, genomic perfection, Intelligent Design, mutations, passenger mutations, quality control mechanisms, Science (journal), WALL-E
Here is a thought-provoking hypothesis in this week’s Science about “genomic perfection” versus “cellular survival.” From “Cellular survival over genomic perfection“ (open access): The high number of passenger mutations, equivalent to 1000 to 10,000 per genome, in normal cells raises questions regarding why DNA quality control mechanisms have failed to limit mutagenesis. Perhaps a somewhat counterintuitive perspective can be considered: If DNA quality control pathways monitor and preserve DNA integrity too strictly, it could be detrimental to cellular survival. The repair of DNA lesions has a cost: It requires time and cellular resources. If every DNA lesion in a cell were repaired, avoiding mutations altogether, the cellular cost associated with performing that repair would have to increase in direct proportion to the amount of damage. In conditions of high DNA damage — through exposure to…
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