Systems Biology and Intelligent Design: A Natural Fit

AmiGO, biological networks, biology, computers, coordination, Darwinian evolution, data networks, datasets, E. coli, Engineering, Gene Ontology, genomics, glycolysis, Intelligent Design, Introduction to Systems Biology, isoforms, Joel Bader, Junk DNA, living systems, long non-coding RNAs, metabolomics, molecular biology, Molecular Systems Biology, mRNA, mutations, optimal design, optimism, proteins, proteomics, reductionist biology, Rube Goldberg, Ruedi Aebersold, smartphones, Systems Biology, Technology, transcription network, transcriptomics, Uri Alon, Yuri Lazebnik
In December 2025, Molecular Systems Biology marked its 20th anniversary with a special editorial that reflects on the field’s development since 2005 (Bheda et al. 2025). Systems biology is an approach to studying living systems that assumes hierarchical, top-down design. The piece, authored by the journal’s editors and several contributors, shares personal perspectives on where the field stands today — and where it is headed. Ruedi Aebersold, the first contributor, states, “the first 20 years of MSB were grand; the next 20 years will be grander.”  I too am optimistic about the field’s future. My optimism comes specifically from how powerfully top-down design has succeeded in giving us the complex systems of the modern world. Top-down design prunes the vast search space of possibilities through an Read More › Source
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Brain Imaging Shows Intelligence Uses the Whole Brain

brain, brain imaging, cerebellum, coordination, fMRI, Kirsten Hilger, Medicine, Michael Egnor, mind, movement, neuroanatomy, neurophysiology, neuroscience, Neuroscience & Mind, neurosurgeons, PNAS Nexus, strokes, textbooks, The Immortal Mind, thinking, tumors
A focus on specific regions like the prefrontal cortex can mislead. When we are thinking, we use brain-wide connections between many parts of the brain at once. Source
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Co-Option and Protein Homology Don’t Explain the Evolution of the Flagellum

author, bacteria, bacterial flagellum, Brian Miller, co-option, coordination, Darwin Devolves, Darwin's Black Box, Emily Reeves, Evolution, evolutionary models, flagellar assembly, flagellar function, H. Allen Orr, indirect evolution, Intelligent Design, Irreducible Complexity, mental agent, Michael Behe, Nicholas Matzke, protein homology, proteins, Rope Kojonen, Stephen Dilley, synchronization, T3SS, The Compatibility of Evolution and Design, The Compatibility of Evolution and Design (series), Type 3 Secretory System
Rope Kojonen wants to join “design and evolution,” but only by setting aside some of the main features of the flagellum. Source
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