Systems Biology and Intelligent Design: A Natural Fit

AmiGO, biological networks, biology, computers, coordination, Darwinian evolution, data networks, datasets, E. coli, Engineering, Gene Ontology, genomics, glycolysis, Intelligent Design, Introduction to Systems Biology, isoforms, Joel Bader, Junk DNA, living systems, long non-coding RNAs, metabolomics, molecular biology, Molecular Systems Biology, mRNA, mutations, optimal design, optimism, proteins, proteomics, reductionist biology, Rube Goldberg, Ruedi Aebersold, smartphones, Systems Biology, Technology, transcription network, transcriptomics, Uri Alon, Yuri Lazebnik
In December 2025, Molecular Systems Biology marked its 20th anniversary with a special editorial that reflects on the field’s development since 2005 (Bheda et al. 2025). Systems biology is an approach to studying living systems that assumes hierarchical, top-down design. The piece, authored by the journal’s editors and several contributors, shares personal perspectives on where the field stands today — and where it is headed. Ruedi Aebersold, the first contributor, states, “the first 20 years of MSB were grand; the next 20 years will be grander.”  I too am optimistic about the field’s future. My optimism comes specifically from how powerfully top-down design has succeeded in giving us the complex systems of the modern world. Top-down design prunes the vast search space of possibilities through an Read More › Source
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No. 3 Story for 2025: Immaterial Genome Is Richard Sternberg’s Labor of Love

biology, Christianity, David Klinghoffer, DNA, Evolution, Faith & Science, genes, genetic instructions, geneticists, genome, Georg Cantor, immaterial genome, infinite sets, Intelligent Design, Judaism, leather shoes, Life Itself, material genome, materialism, mathematics, non-coding DNA, pearls, Plato, proteins, recombination, Richard Sternberg, Robert Rosen, set theory, sneakers, transposable elements, tsimtsum
Rick Sternberg's thought has the potential to demonstrate conclusively the need for an intelligent designer. Source
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The Eclipse of the Organism: No Longer Biology’s Central Interest

animals, Ascaris megalocephala, bar code, Cenorhabditis elegans, Chemistry, chimpanzees, chromosome number, chromosomes, Cruciferae, DNA, donkeys, Drosophila, Evolution, ferns, fruit flies, genes, genetics, homunculus, humans, idiogram, Junk DNA, Lego blocks, Ninth Symphony, nucleotides, Ophioglossum petiolatum, Parthenon, physics, plants, proteins, roundworm, Salvador Dalì, wheat, zebras
Organisms have disappeared below the horizon. In many papers on DNA the organism is barely mentioned. Source
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Life’s Informational Discontinuities: Where Unintelligent Processes Fail

bacteria, cars, chance, Complexity, Evolution, genome, hieroglyphics, ID The Future, Intelligent Design, life, materialism, Michael Denton, Michael Kent, molecular machines, nature, Podcast, proteins, scientific authorities, scientific inquiry, scientific materialists, software, specified information, unguided natural processes, unintelligent processes, universe
In our experience, this type of specified information always comes from a mind, whether it’s hieroglyphics or the origin of a car. Source
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With Foresight, Cells Prepare for Emergency

ageing, biology, biowaste, cancer, cell's, Darwinism, dendritic cells, disasters, disposal services, DNA, DNA-Protein Crosslinks, electron transport chain, Erika Causa, Evolution, Immune System, Institute of Science and Technology Austria, Intelligent Design, Irreducible Complexity, lipids, Mark Fransen, Michael Behe, mitochondria, molecular machines, Nature Immunology, neurodegeneration, Nucleic Acids Research, organelles, Patricia Reis-Rodriguez, proteins, reactive oxygen species, topoisomerase, University of Cambridge, University of Strathclyde
Fire departments and rescue operations don’t just appear from nowhere. They require foresight to save entities from trouble. Cells know that.  Source
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New Article from James Tour Undermines a Pillar of Origin-of-Life Theories

amino acids, BioCosmos, biomolecules, building blocks, C. James, cell's, diffusion, diffusion coefficient, dipeptide, discovery time, Evolution, half-life, intelligent agent, Intelligent Design, James Tour, M. C. Parker, nucleotides, origin of life, peptide bond, physics, proteins, Rice University, RNA, statistical decay theory, thermodynamics, water
Proteins and RNA degrade at rates that render their spontaneous formation under natural, undirected conditions highly implausible. Source
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Recurring Design Logic in Living Systems

attractants, Bacillus subtilis, bacteria, biological systems, biology, bioluminescence, chemotaxis, Complexity, Darwin's Black Box, E. coli, Evolution, genes, Intelligent Design, Jonathan McLatchie, Michael Behe, musicians, outer membrane, painters, poisons, proteins, Salmonella, signal transduction, sporulation, toxins
Architects, painters, musicians, and other creators apply recognizable patterns of thinking to their craft. Source
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How Darwinism Became a Pseudoscience

Alzheimer’s disease, amino acid, Bret Weinstein, Canadian universities, common descent, Darwinism, Darwinists, DNA, Eugene Koonin, Evolution, evolutionary biology, functional information, genetic drift, genomes, Jack Szostak, Life Sciences, Long Term Evolutionary Experiment, lying, mad cow disease, multiverse, mutations, natural selection, Nature (journal), Parkinson’s disease, population, predictions, protein-coding genes, proteins, pseudoscience, Richard Lenski, Robert Hazen, scientific reasoning, scientists, variation
To be clear, I am not suggesting that Darwinists are conspiring to deliberately mislead people, although such misleading is certainly happening. Source
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The Math Behind the Immaterial Genome 

algorithm, algorithmic information, carbohydrates, cognition, David Klinghoffer, death, deformations, development, DNA, egg, embryo, embryology, Evolution, fetus, genes, immaterial genome, infant, information, instructions, Intelligent Design, lipids, mathematics, mutations, Mycoplasma genitalium, Plato, Plato's Revenge, preformationist, proteins, Richard Sternberg, RNA, scientific reasoning, simulation software package, trans-computational, zygote
While not a formal defense, this analysis aims to give readers an intuitive grasp of the reasoning behind Richard Sternberg's Platonic perspective. Source
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Nobelist Thomas Cech on “Junk RNA” 

biochemists, biology, Darwinism, DNA, Evolution, genetics, heuristic, Intelligent Design, Junk DNA, junk RNA, lncRNAs, long noncoding RNAs, mRNA, neo-Darwinian paradigm, Nobel Prize, predictions, proteins, RNA, scientific progress, The Catalyst, Thomas Cech, W. W. Norton
We can add this prominent biochemist to the ever-growing list of scientists who reject the “junk DNA” paradigm. Or, more pertinently, the junk RNA paradigm. Source
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